J3_7TOO_011

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

7TOO|1|A25S|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOO_011 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1468

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7TOO|1|A25S|C|1631
7TOO|1|A25S|A|1632
*
7TOO|1|A25S|U|1641
7TOO|1|A25S|A|1642
7TOO|1|A25S|A|1643
7TOO|1|A25S|C|1644
7TOO|1|A25S|U|1645
*
7TOO|1|A25S|A|1810
7TOO|1|A25S|G|1811

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL27

60S ribosomal protein L27-A

Chain AL34

60S ribosomal protein L34-A

Chain AL38

RPL38 isoform 1