3D structure

PDB id
7TOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
7TOO|1|A25S|A|2887, 7TOO|1|A25S|U|2888
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOO_015 not in the Motif Atlas
Homologous match to J3_8C3A_011
Geometric discrepancy: 0.0813
The information below is about J3_8C3A_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

7TOO|1|A25S|U|2886
7TOO|1|A25S|A|2887
7TOO|1|A25S|U|2888
7TOO|1|A25S|C|2889
*
7TOO|1|A25S|G|2914
7TOO|1|A25S|U|2915
7TOO|1|A25S|U|2916
*
7TOO|1|A25S|A|2930
7TOO|1|A25S|C|2931
7TOO|1|A25S|U|2932
7TOO|1|A25S|A|2933
7TOO|1|A25S|A|2934
7TOO|1|A25S|U|2935
7TOO|1|A25S|A|2936

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL03
RPL3 isoform 1
Chain AL16
60S ribosomal protein L16-A
Chain AL23
60S ribosomal protein L23-A

Coloring options:


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