J3_7TOO_017
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 7TOO|1|A5S|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOO_017 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.1013
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7TOO|1|A5S|C|9
7TOO|1|A5S|C|10
7TOO|1|A5S|A|11
7TOO|1|A5S|U|12
7TOO|1|A5S|A|13
7TOO|1|A5S|U|14
*
7TOO|1|A5S|A|66
7TOO|1|A5S|G|67
*
7TOO|1|A5S|U|111
7TOO|1|A5S|G|112
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL05
- RPL5 isoform 1
- Chain AL10
- RPL10 isoform 1
- Chain AL21
- 60S ribosomal protein L21-A
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