J3_7TOO_019

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

7TOO|1|A25S|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOO_019 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.1008

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75408.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7TOO|1|A25S|C|185
7TOO|1|A25S|U|186
7TOO|1|A25S|A|187
7TOO|1|A25S|U|188
7TOO|1|A25S|G|189
*
7TOO|1|A25S|C|205
7TOO|1|A25S|G|206
7TOO|1|A25S|U|207
7TOO|1|A25S|C|208
7TOO|1|A25S|A|209
7TOO|1|A25S|U|210
7TOO|1|A25S|A|211
7TOO|1|A25S|G|212
7TOO|1|A25S|A|213
7TOO|1|A25S|G|214
*
7TOO|1|A25S|C|226
7TOO|1|A25S|G|227
7TOO|1|A25S|U|228
7TOO|1|A25S|G|229
7TOO|1|A25S|U|230
7TOO|1|A25S|G|231

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL04

RPL4A isoform 1

Chain AL26

60S ribosomal protein L26-A