J3_7TOO_026
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 7TOO|1|A58S|U|60, 7TOO|1|A58S|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOO_026 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.0845
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
7TOO|1|A58S|A|44
7TOO|1|A58S|C|45
*
7TOO|1|A58S|G|58
7TOO|1|A58S|A|59
7TOO|1|A58S|U|60
7TOO|1|A58S|A|61
7TOO|1|A58S|C|62
7TOO|1|A58S|G|63
7TOO|1|A58S|U|64
*
7TOO|1|A58S|A|96
7TOO|1|A58S|A|97
7TOO|1|A58S|U|98
7TOO|1|A58S|C|99
7TOO|1|A58S|U|100
Current chains
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL25
- 60S ribosomal protein L25
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL37
- 60S ribosomal protein L37-A
- Chain AL39
- 60S ribosomal protein L39
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