J3_7TOP_004
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 7TOP|1|A25S|A|817, 7TOP|1|A25S|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOP_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0699
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOP|1|A25S|U|814
7TOP|1|A25S|G|815
7TOP|1|A25S|A|816
7TOP|1|A25S|A|817
7TOP|1|A25S|C|818
7TOP|1|A25S|U|819
7TOP|1|A25S|A|820
*
7TOP|1|A25S|U|905
7TOP|1|A25S|A|906
7TOP|1|A25S|G|907
*
7TOP|1|A25S|C|923
7TOP|1|A25S|G|924
7TOP|1|A25S|A|925
7TOP|1|A25S|A|926
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L2-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL37
- 60S ribosomal protein L37-A
- Chain AL39
- 60S ribosomal protein L39
Coloring options: