3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
7TOP|1|A25S|A|817, 7TOP|1|A25S|G|924
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOP_004 not in the Motif Atlas
Homologous match to J3_8C3A_003
Geometric discrepancy: 0.0699
The information below is about J3_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

7TOP|1|A25S|U|814
7TOP|1|A25S|G|815
7TOP|1|A25S|A|816
7TOP|1|A25S|A|817
7TOP|1|A25S|C|818
7TOP|1|A25S|U|819
7TOP|1|A25S|A|820
*
7TOP|1|A25S|U|905
7TOP|1|A25S|A|906
7TOP|1|A25S|G|907
*
7TOP|1|A25S|C|923
7TOP|1|A25S|G|924
7TOP|1|A25S|A|925
7TOP|1|A25S|A|926

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL02
60S ribosomal protein L2-A
Chain AL15
60S ribosomal protein L15-A
Chain AL37
60S ribosomal protein L37-A
Chain AL39
60S ribosomal protein L39

Coloring options:


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