3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAAA*UGAUAAC*GUC
Length
14 nucleotides
Bulged bases
7TOP|1|A25S|U|1840, 7TOP|1|A25S|A|1841
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOP_009 not in the Motif Atlas
Homologous match to J3_8C3A_007
Geometric discrepancy: 0.0986
The information below is about J3_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_74051.1
Basepair signature
cWW-tSH-tWW-tHW-F-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

7TOP|1|A25S|G|1488
7TOP|1|A25S|A|1489
7TOP|1|A25S|A|1490
7TOP|1|A25S|A|1491
*
7TOP|1|A25S|U|1837
7TOP|1|A25S|G|1838
7TOP|1|A25S|A|1839
7TOP|1|A25S|U|1840
7TOP|1|A25S|A|1841
7TOP|1|A25S|A|1842
7TOP|1|A25S|C|1843
*
7TOP|1|A25S|G|1852
7TOP|1|A25S|U|1853
7TOP|1|A25S|C|1854

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain A58S
5.8S ribosomal RNA; 5.8S rRNA
Chain AL34
60S ribosomal protein L34-A
Chain AL37
60S ribosomal protein L37-A
Chain AL39
60S ribosomal protein L39

Coloring options:


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