J3_7TOP_028
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 7TOP|1|A58S|U|60, 7TOP|1|A58S|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOP_028 not in the Motif Atlas
- Homologous match to J3_8P4V_024
- Geometric discrepancy: 0.072
- The information below is about J3_8P4V_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
7TOP|1|A58S|A|44
7TOP|1|A58S|C|45
*
7TOP|1|A58S|G|58
7TOP|1|A58S|A|59
7TOP|1|A58S|U|60
7TOP|1|A58S|A|61
7TOP|1|A58S|C|62
7TOP|1|A58S|G|63
7TOP|1|A58S|U|64
*
7TOP|1|A58S|A|96
7TOP|1|A58S|A|97
7TOP|1|A58S|U|98
7TOP|1|A58S|C|99
7TOP|1|A58S|U|100
Current chains
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL25
- 60S ribosomal protein L25
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL37
- 60S ribosomal protein L37-A
- Chain AL39
- 60S ribosomal protein L39
Coloring options: