J3_7TOQ_002
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UAAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 7TOQ|1|A18S|G|921
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOQ_002 not in the Motif Atlas
- Geometric match to J3_4V88_080
- Geometric discrepancy: 0.3076
- The information below is about J3_4V88_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7TOQ|1|A18S|U|682
7TOQ|1|A18S|G|683
7TOQ|1|A18S|G|684
*
7TOQ|1|A18S|U|918
7TOQ|1|A18S|A|919
7TOQ|1|A18S|A|920
7TOQ|1|A18S|G|921
7TOQ|1|A18S|A|922
*
7TOQ|1|A18S|U|1022
7TOQ|1|A18S|A|1023
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS07
- eS7
- Chain AS11
- 40S ribosomal protein S11
- Chain AS13
- 40S ribosomal protein S13
- Chain AS22
- 40S ribosomal protein S15a
- Chain AS23
- 40S ribosomal protein S23
- Chain AS27
- 40S ribosomal protein S27
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