J3_7TOQ_037
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOQ_037 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1477
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7TOQ|1|A25S|A|2598
7TOQ|1|A25S|G|2599
7TOQ|1|A25S|A|2600
7TOQ|1|A25S|A|2601
7TOQ|1|A25S|G|2602
*
7TOQ|1|A25S|C|2737
7TOQ|1|A25S|C|2738
*
7TOQ|1|A25S|G|2742
7TOQ|1|A25S|A|2743
7TOQ|1|A25S|A|2744
7TOQ|1|A25S|A|2745
7TOQ|1|A25S|A|2746
7TOQ|1|A25S|U|2747
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL02
- uL2
- Chain AL34
- 60S ribosomal protein L34
- Chain AL43
- 60S ribosomal protein L37a
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