J3_7TOQ_038
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 7TOQ|1|A25S|C|4337, 7TOQ|1|A25S|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOQ_038 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1026
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7TOQ|1|A25S|G|4228
7TOQ|1|A25S|U|4229
7TOQ|1|A25S|C|4230
*
7TOQ|1|A25S|G|4331
7TOQ|1|A25S|C|4332
7TOQ|1|A25S|C|4333
7TOQ|1|A25S|U|4334
7TOQ|1|A25S|C|4335
7TOQ|1|A25S|A|4336
7TOQ|1|A25S|C|4337
7TOQ|1|A25S|G|4338
7TOQ|1|A25S|A|4339
7TOQ|1|A25S|U|4340
7TOQ|1|A25S|C|4341
7TOQ|1|A25S|C|4342
*
7TOQ|1|A25S|G|4370
7TOQ|1|A25S|G|4371
7TOQ|1|A25S|U|4372
7TOQ|1|A25S|G|4373
7TOQ|1|A25S|U|4374
7TOQ|1|A25S|C|4375
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL18
- eL18
- Chain AL21
- 60S ribosomal protein L21
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL42
- eL42
- Chain PTRN
- Transfer RNA; tRNA
Coloring options: