J3_7TOQ_042

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOQ_042 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2425

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

7TOQ|1|A25S|G|1969
7TOQ|1|A25S|A|1970
7TOQ|1|A25S|U|1971
*
7TOQ|1|A25S|G|1995
7TOQ|1|A25S|C|1996
7TOQ|1|A25S|U|1997
7TOQ|1|A25S|A|1998
7TOQ|1|A25S|A|1999
7TOQ|1|A25S|G|2000
7TOQ|1|A25S|G|2001
*
7TOQ|1|A25S|C|2016
7TOQ|1|A25S|A|2017
7TOQ|1|A25S|C|2018

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL12

60S ribosomal protein L12

Chain ALP0

60S acidic ribosomal protein P0