J3_7TOR_009

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7TOR|1|A18S|G|1274, 7TOR|1|A18S|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOR_009 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1817

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7TOR|1|A18S|C|1272
7TOR|1|A18S|C|1273
7TOR|1|A18S|G|1274
7TOR|1|A18S|G|1275
7TOR|1|A18S|A|1276
7TOR|1|A18S|C|1277
*
7TOR|1|A18S|G|1320
7TOR|1|A18S|G|1321
7TOR|1|A18S|G|1322
7TOR|1|A18S|U|1323
7TOR|1|A18S|G|1324
*
7TOR|1|A18S|U|1504
7TOR|1|A18S|U|1505
7TOR|1|A18S|A|1506
7TOR|1|A18S|G|1507
7TOR|1|A18S|A|1508
7TOR|1|A18S|U|1509
7TOR|1|A18S|G|1510

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS10

40S ribosomal protein S10

Chain AS29

40S ribosomal protein S29

Chain AS31

40S ribosomal protein S27a