3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAAG*CCAUAUC*GUC
Length
14 nucleotides
Bulged bases
7TOR|1|A28S|U|2788, 7TOR|1|A28S|A|2789
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOR_021 not in the Motif Atlas
Homologous match to J3_8C3A_007
Geometric discrepancy: 0.2485
The information below is about J3_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_74051.1
Basepair signature
cWW-tSH-tWW-tHW-F-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

7TOR|1|A28S|G|2402
7TOR|1|A28S|A|2403
7TOR|1|A28S|A|2404
7TOR|1|A28S|G|2405
*
7TOR|1|A28S|C|2785
7TOR|1|A28S|C|2786
7TOR|1|A28S|A|2787
7TOR|1|A28S|U|2788
7TOR|1|A28S|A|2789
7TOR|1|A28S|U|2790
7TOR|1|A28S|C|2791
*
7TOR|1|A28S|G|2800
7TOR|1|A28S|U|2801
7TOR|1|A28S|C|2802

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain AL34
60S ribosomal protein L34
Chain AL37
60S ribosomal protein L37
Chain AL39
60S ribosomal protein L39

Coloring options:


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