J3_7TOR_024
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 7TOR|1|A28S|C|4116, 7TOR|1|A28S|U|4117, 7TOR|1|A28S|U|4118, 7TOR|1|A28S|C|4119, 7TOR|1|A28S|U|4120, 7TOR|1|A28S|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOR_024 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.3028
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7TOR|1|A28S|G|4091
7TOR|1|A28S|G|4092
7TOR|1|A28S|G|4093
7TOR|1|A28S|G|4094
*
7TOR|1|A28S|C|4114
7TOR|1|A28S|G|4115
7TOR|1|A28S|C|4116
7TOR|1|A28S|U|4117
7TOR|1|A28S|U|4118
7TOR|1|A28S|C|4119
7TOR|1|A28S|U|4120
7TOR|1|A28S|G|4121
7TOR|1|A28S|G|4122
7TOR|1|A28S|C|4123
7TOR|1|A28S|G|4124
7TOR|1|A28S|C|4125
7TOR|1|A28S|C|4126
7TOR|1|A28S|A|4127
7TOR|1|A28S|A|4128
7TOR|1|A28S|G|4129
*
7TOR|1|A28S|C|4155
7TOR|1|A28S|G|4156
7TOR|1|A28S|A|4157
7TOR|1|A28S|C|4158
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L8
- Chain AL08
- eL8
- Chain AL27
- 60S ribosomal protein L27
- Chain AL30
- 60S ribosomal protein L30
- Chain AL34
- 60S ribosomal protein L34
- Chain AL43
- 60S ribosomal protein L37a
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