3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
7TOR|1|A28S|A|4464, 7TOR|1|A28S|U|4465
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOR_026 not in the Motif Atlas
Homologous match to J3_8C3A_011
Geometric discrepancy: 0.0886
The information below is about J3_8C3A_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

7TOR|1|A28S|U|4463
7TOR|1|A28S|A|4464
7TOR|1|A28S|U|4465
7TOR|1|A28S|C|4466
*
7TOR|1|A28S|G|4491
7TOR|1|A28S|U|4492
7TOR|1|A28S|U|4493
*
7TOR|1|A28S|A|4507
7TOR|1|A28S|C|4508
7TOR|1|A28S|U|4509
7TOR|1|A28S|A|4510
7TOR|1|A28S|A|4511
7TOR|1|A28S|U|4512
7TOR|1|A28S|A|4513

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain AL03
60S ribosomal protein L3
Chain AL16
uL13
Chain AL23
60S ribosomal protein L23

Coloring options:


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