J3_7TOS_007
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7TOS|1|16S|A|975, 7TOS|1|16S|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOS_007 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0907
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7TOS|1|16S|U|955
7TOS|1|16S|U|956
7TOS|1|16S|U|957
7TOS|1|16S|A|958
7TOS|1|16S|A|959
7TOS|1|16S|U|960
7TOS|1|16S|U|961
7TOS|1|16S|C|962
*
7TOS|1|16S|G|973
7TOS|1|16S|A|974
7TOS|1|16S|A|975
7TOS|1|16S|G|976
7TOS|1|16S|A|977
7TOS|1|16S|A|978
7TOS|1|16S|C|979
7TOS|1|16S|C|980
7TOS|1|16S|U|981
7TOS|1|16S|U|982
7TOS|1|16S|A|983
7TOS|1|16S|C|984
*
7TOS|1|16S|G|1221
7TOS|1|16S|G|1222
7TOS|1|16S|C|1223
7TOS|1|16S|U|1224
7TOS|1|16S|A|1225
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S10
- 30S ribosomal protein S10
- Chain S13
- 30S ribosomal protein S13
- Chain S14
- 30S ribosomal protein S14
- Chain S19
- 30S ribosomal protein S19
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