J3_7TOS_014

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOS_014 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.1123

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

7TOS|1|23S|G|30
7TOS|1|23S|C|31
*
7TOS|1|23S|G|474
7TOS|1|23S|C|475
7TOS|1|23S|G|476
7TOS|1|23S|A|477
7TOS|1|23S|A|478
7TOS|1|23S|A|479
7TOS|1|23S|A|480
7TOS|1|23S|G|481
*
7TOS|1|23S|C|509
7TOS|1|23S|C|510

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L20

50S ribosomal protein L20

Chain L24

Ribosomal protein L24