J3_7TOS_016
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 7TOS|1|23S|U|686, 7TOS|1|23S|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOS_016 not in the Motif Atlas
- Homologous match to J3_8VTW_001
- Geometric discrepancy: 0.1969
- The information below is about J3_8VTW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOS|1|23S|U|683
7TOS|1|23S|G|684
7TOS|1|23S|A|685
7TOS|1|23S|U|686
7TOS|1|23S|C|687
7TOS|1|23S|U|688
7TOS|1|23S|A|689
*
7TOS|1|23S|U|773
7TOS|1|23S|G|774
7TOS|1|23S|G|775
*
7TOS|1|23S|C|791
7TOS|1|23S|A|792
7TOS|1|23S|A|793
7TOS|1|23S|A|794
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L02
- 50S ribosomal protein L2
- Chain L34
- 50S ribosomal protein L34
- Chain PR
- PR20, ALS/FTD dipeptide repeat protein
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