J3_7TOS_017

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOS_017 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.1064

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7TOS|1|23S|C|698
7TOS|1|23S|A|699
7TOS|1|23S|G|700
*
7TOS|1|23S|C|732
7TOS|1|23S|G|733
7TOS|1|23S|A|734
7TOS|1|23S|A|735
7TOS|1|23S|C|736
*
7TOS|1|23S|G|760
7TOS|1|23S|A|761
7TOS|1|23S|U|762
7TOS|1|23S|G|763

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2