J3_7TOS_020

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7TOS|1|23S|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOS_020 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.1571

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7TOS|1|23S|C|1306
7TOS|1|23S|A|1307
7TOS|1|23S|A|1308
7TOS|1|23S|G|1309
*
7TOS|1|23S|C|1605
7TOS|1|23S|C|1606
7TOS|1|23S|C|1607
7TOS|1|23S|A|1608
7TOS|1|23S|A|1609
7TOS|1|23S|A|1610
7TOS|1|23S|C|1611
*
7TOS|1|23S|G|1620
7TOS|1|23S|U|1621
7TOS|1|23S|G|1622

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L34

50S ribosomal protein L34