J3_7TOS_022

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOS_022 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.1331

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7TOS|1|23S|C|2091
7TOS|1|23S|U|2092
7TOS|1|23S|G|2093
*
7TOS|1|23S|C|2196
7TOS|1|23S|U|2197
7TOS|1|23S|A|2198
7TOS|1|23S|A|2199
7TOS|1|23S|C|2200
*
7TOS|1|23S|G|2223
7TOS|1|23S|G|2224
7TOS|1|23S|A|2225
7TOS|1|23S|C|2226
7TOS|1|23S|A|2227
7TOS|1|23S|G|2228

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2

Chain L09

50S ribosomal protein L9

Chain L28

50S ribosomal protein L28