J3_7TOS_032
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 7TOS|1|23S|A|504, 7TOS|1|23S|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOS_032 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.0936
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7TOS|1|23S|G|30
7TOS|1|23S|C|31
*
7TOS|1|23S|G|474
7TOS|1|23S|C|475
7TOS|1|23S|G|476
7TOS|1|23S|A|477
7TOS|1|23S|A|478
7TOS|1|23S|A|479
7TOS|1|23S|A|480
7TOS|1|23S|G|481
7TOS|1|23S|A|482
7TOS|1|23S|A|483
7TOS|1|23S|C|484
*
7TOS|1|23S|G|496
7TOS|1|23S|A|497
7TOS|1|23S|G|498
7TOS|1|23S|U|499
7TOS|1|23S|G|500
7TOS|1|23S|A|501
7TOS|1|23S|A|502
7TOS|1|23S|A|503
7TOS|1|23S|A|504
7TOS|1|23S|A|505
7TOS|1|23S|G|506
7TOS|1|23S|A|507
7TOS|1|23S|A|508
7TOS|1|23S|C|509
7TOS|1|23S|C|510
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L20
- 50S ribosomal protein L20
- Chain L22
- 50S ribosomal protein L22
- Chain L24
- Ribosomal protein L24
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