J3_7TQL_005

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TQL_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1047

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7TQL|1|2|C|1218
7TQL|1|2|C|1219
7TQL|1|2|A|1220
7TQL|1|2|G|1221
*
7TQL|1|2|C|1645
7TQL|1|2|C|1646
7TQL|1|2|A|1647
7TQL|1|2|G|1648
7TQL|1|2|U|1649
7TQL|1|2|A|1650
7TQL|1|2|A|1651
*
7TQL|1|2|U|1673
7TQL|1|2|G|1674
7TQL|1|2|A|1675
7TQL|1|2|U|1676
7TQL|1|2|U|1677
7TQL|1|2|A|1678
7TQL|1|2|A|1679
7TQL|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S5

Chain R

40S ribosomal protein S16

Chain d

ribosomal protein eS28