J3_7TQL_008

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7TQL|1|2|G|1274, 7TQL|1|2|G|1507, 7TQL|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TQL_008 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.095

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7TQL|1|2|C|1272
7TQL|1|2|C|1273
7TQL|1|2|G|1274
7TQL|1|2|G|1275
7TQL|1|2|A|1276
7TQL|1|2|C|1277
*
7TQL|1|2|G|1320
7TQL|1|2|G|1321
7TQL|1|2|G|1322
7TQL|1|2|U|1323
7TQL|1|2|G|1324
*
7TQL|1|2|U|1504
7TQL|1|2|U|1505
7TQL|1|2|A|1506
7TQL|1|2|G|1507
7TQL|1|2|A|1508
7TQL|1|2|U|1509
7TQL|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S10

Chain f

ribosomal protein uS14

Chain g

40S ribosomal protein S27a