J3_7TTU_001

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TTU_001 not in the Motif Atlas

Geometric match to J3_7A0S_001

Geometric discrepancy: 0.1387

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

7TTU|1|1|G|30
7TTU|1|1|C|31
*
7TTU|1|1|G|520
7TTU|1|1|U|521
7TTU|1|1|G|522
7TTU|1|1|A|523
7TTU|1|1|A|524
7TTU|1|1|A|525
7TTU|1|1|A|526
7TTU|1|1|G|527
*
7TTU|1|1|C|554
7TTU|1|1|C|555

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L20

Chain G

50S ribosomal protein L24