J3_7TTU_003

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7TTU|1|1|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TTU_003 not in the Motif Atlas

Geometric match to J3_4WF9_022

Geometric discrepancy: 0.1367

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7TTU|1|1|C|272
7TTU|1|1|A|273
7TTU|1|1|A|274
7TTU|1|1|A|275
7TTU|1|1|C|276
*
7TTU|1|1|G|295
7TTU|1|1|G|296
7TTU|1|1|G|297
7TTU|1|1|U|298
7TTU|1|1|U|299
7TTU|1|1|G|300
7TTU|1|1|U|301
7TTU|1|1|A|302
*
7TTU|1|1|U|415
7TTU|1|1|G|416

Current chains

Chain 1

23S rRNA

Nearby chains