J3_7TUT_008

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

7TUT|1|K|U|2788, 7TUT|1|K|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TUT_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.2669

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7TUT|1|K|G|2402
7TUT|1|K|A|2403
7TUT|1|K|A|2404
7TUT|1|K|G|2405
*
7TUT|1|K|C|2785
7TUT|1|K|C|2786
7TUT|1|K|A|2787
7TUT|1|K|U|2788
7TUT|1|K|A|2789
7TUT|1|K|U|2790
7TUT|1|K|C|2791
*
7TUT|1|K|G|2800
7TUT|1|K|U|2801
7TUT|1|K|C|2802

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L34

Chain j

Ribosomal protein L37

Chain l

eL39