J3_7TUT_012

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TUT_012 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.2958

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7TUT|1|K|C|3937
7TUT|1|K|G|3938
7TUT|1|K|G|3939
*
7TUT|1|K|C|4074
7TUT|1|K|U|4075
7TUT|1|K|G|4076
7TUT|1|K|A|4077
7TUT|1|K|C|4078
*
7TUT|1|K|G|4168
7TUT|1|K|G|4169
7TUT|1|K|A|4170
7TUT|1|K|C|4171
7TUT|1|K|A|4172
7TUT|1|K|G|4173

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15