J3_7TUT_015

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7TUT|1|K|A|4464, 7TUT|1|K|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TUT_015 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1006

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7TUT|1|K|U|4463
7TUT|1|K|A|4464
7TUT|1|K|U|4465
7TUT|1|K|C|4466
*
7TUT|1|K|G|4491
7TUT|1|K|U|4492
7TUT|1|K|U|4493
*
7TUT|1|K|A|4507
7TUT|1|K|C|4508
7TUT|1|K|U|4509
7TUT|1|K|A|4510
7TUT|1|K|A|4511
7TUT|1|K|U|4512
7TUT|1|K|A|4513

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain O

uL13

Chain V

Ribosomal protein L23

Chain w

uL3