J3_7U2I_078

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2I_078 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1841

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7U2I|1|2a|C|990
7U2I|1|2a|U|991
7U2I|1|2a|U|992
7U2I|1|2a|G|993
7U2I|1|2a|A|994
7U2I|1|2a|C|995
7U2I|1|2a|A|996
7U2I|1|2a|U|997
*
7U2I|1|2a|A|1044
7U2I|1|2a|C|1045
7U2I|1|2a|A|1046
7U2I|1|2a|G|1047
*
7U2I|1|2a|C|1210
7U2I|1|2a|U|1211
7U2I|1|2a|U|1212
7U2I|1|2a|A|1213
7U2I|1|2a|C|1214
7U2I|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z