J3_7U2J_045

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7U2J|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2J_045 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0696

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7U2J|1|2a|C|826
7U2J|1|2a|U|827
7U2J|1|2a|A|828
7U2J|1|2a|G|829
*
7U2J|1|2a|C|857
7U2J|1|2a|G|858
7U2J|1|2a|A|859
7U2J|1|2a|A|860
7U2J|1|2a|G|861
*
7U2J|1|2a|C|868
7U2J|1|2a|G|869
7U2J|1|2a|U|870
7U2J|1|2a|U|871
7U2J|1|2a|A|872
7U2J|1|2a|A|873
7U2J|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8