3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUUC*GGACCAGAG*CAUUU
Length
18 nucleotides
Bulged bases
7UCJ|1|9|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UCJ_022 not in the Motif Atlas
Homologous match to J3_8P9A_074
Geometric discrepancy: 0.1031
The information below is about J3_8P9A_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76375.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

7UCJ|1|9|A|938
7UCJ|1|9|U|939
7UCJ|1|9|U|940
7UCJ|1|9|C|941
*
7UCJ|1|9|G|985
7UCJ|1|9|G|986
7UCJ|1|9|A|987
7UCJ|1|9|C|988
7UCJ|1|9|C|989
7UCJ|1|9|A|990
7UCJ|1|9|G|991
7UCJ|1|9|A|992
7UCJ|1|9|G|993
*
7UCJ|1|9|C|1000
7UCJ|1|9|A|1001
7UCJ|1|9|U|1002
7UCJ|1|9|U|1003
7UCJ|1|9|U|1004

Current chains

Chain 9
18S rRNA

Nearby chains

Chain Aa
eS26
Chain BB
40S ribosomal protein S3a
Chain NN
40S ribosomal protein S13
Chain OO
40S ribosomal protein S14
Chain p
60S ribosomal protein L37a

Coloring options:


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