J3_7UCJ_022
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7UCJ|1|9|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UCJ_022 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1031
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7UCJ|1|9|A|938
7UCJ|1|9|U|939
7UCJ|1|9|U|940
7UCJ|1|9|C|941
*
7UCJ|1|9|G|985
7UCJ|1|9|G|986
7UCJ|1|9|A|987
7UCJ|1|9|C|988
7UCJ|1|9|C|989
7UCJ|1|9|A|990
7UCJ|1|9|G|991
7UCJ|1|9|A|992
7UCJ|1|9|G|993
*
7UCJ|1|9|C|1000
7UCJ|1|9|A|1001
7UCJ|1|9|U|1002
7UCJ|1|9|U|1003
7UCJ|1|9|U|1004
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Aa
- eS26
- Chain BB
- 40S ribosomal protein S3a
- Chain NN
- 40S ribosomal protein S13
- Chain OO
- 40S ribosomal protein S14
- Chain p
- 60S ribosomal protein L37a
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