J3_7UCJ_027

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7UCJ|1|9|G|1274, 7UCJ|1|9|G|1507, 7UCJ|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UCJ_027 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1254

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7UCJ|1|9|C|1272
7UCJ|1|9|C|1273
7UCJ|1|9|G|1274
7UCJ|1|9|G|1275
7UCJ|1|9|A|1276
7UCJ|1|9|C|1277
*
7UCJ|1|9|G|1320
7UCJ|1|9|G|1321
7UCJ|1|9|G|1322
7UCJ|1|9|U|1323
7UCJ|1|9|G|1324
*
7UCJ|1|9|U|1504
7UCJ|1|9|U|1505
7UCJ|1|9|A|1506
7UCJ|1|9|G|1507
7UCJ|1|9|A|1508
7UCJ|1|9|U|1509
7UCJ|1|9|G|1510

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Dd

40S ribosomal protein S29

Chain KK

40S ribosomal protein S10