J3_7UCK_028

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7UCK|1|9|G|1274, 7UCK|1|9|G|1507, 7UCK|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UCK_028 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1145

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7UCK|1|9|C|1272
7UCK|1|9|C|1273
7UCK|1|9|G|1274
7UCK|1|9|G|1275
7UCK|1|9|A|1276
7UCK|1|9|C|1277
*
7UCK|1|9|G|1320
7UCK|1|9|G|1321
7UCK|1|9|G|1322
7UCK|1|9|U|1323
7UCK|1|9|G|1324
*
7UCK|1|9|U|1504
7UCK|1|9|U|1505
7UCK|1|9|A|1506
7UCK|1|9|G|1507
7UCK|1|9|A|1508
7UCK|1|9|U|1509
7UCK|1|9|G|1510

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Dd

40S ribosomal protein S29

Chain KK

40S ribosomal protein S10