J3_7UG7_013

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7UG7|1|16|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UG7_013 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2193

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7UG7|1|16|C|1237
7UG7|1|16|A|1238
7UG7|1|16|A|1239
7UG7|1|16|U|1240
7UG7|1|16|G|1241
*
7UG7|1|16|C|1296
7UG7|1|16|G|1297
7UG7|1|16|U|1298
7UG7|1|16|A|1299
7UG7|1|16|G|1300
7UG7|1|16|U|1301
7UG7|1|16|C|1302
7UG7|1|16|C|1303
*
7UG7|1|16|G|1334
7UG7|1|16|U|1335
7UG7|1|16|C|1336
7UG7|1|16|G|1337

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SG

30S ribosomal protein S7

Chain SM

30S ribosomal protein S13