3D structure

PDB id
7UG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B
Experimental method
ELECTRON MICROSCOPY
Resolution
2.58 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
7UG7|1|23|A|504, 7UG7|1|23|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UG7_033 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1377
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7UG7|1|23|G|30
7UG7|1|23|C|31
*
7UG7|1|23|G|474
7UG7|1|23|C|475
7UG7|1|23|G|476
7UG7|1|23|A|477
7UG7|1|23|A|478
7UG7|1|23|A|479
7UG7|1|23|A|480
7UG7|1|23|G|481
7UG7|1|23|A|482
7UG7|1|23|A|483
7UG7|1|23|C|484
*
7UG7|1|23|G|496
7UG7|1|23|A|497
7UG7|1|23|G|498
7UG7|1|23|U|499
7UG7|1|23|G|500
7UG7|1|23|A|501
7UG7|1|23|A|502
7UG7|1|23|A|503
7UG7|1|23|A|504
7UG7|1|23|A|505
7UG7|1|23|G|506
7UG7|1|23|A|507
7UG7|1|23|A|508
7UG7|1|23|C|509
7UG7|1|23|C|510

Current chains

Chain 23
23S rRNA

Nearby chains

Chain LT
50S ribosomal protein L20
Chain LV
50S ribosomal protein L22
Chain LX
50S ribosomal protein L24

Coloring options:


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