3D structure

PDB id
7UNR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
7UNR|1|a|U|1234
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UNR_026 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1331
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

7UNR|1|a|C|1231
7UNR|1|a|A|1232
7UNR|1|a|A|1233
7UNR|1|a|U|1234
7UNR|1|a|G|1235
*
7UNR|1|a|C|1290
7UNR|1|a|G|1291
7UNR|1|a|U|1292
7UNR|1|a|A|1293
7UNR|1|a|G|1294
7UNR|1|a|U|1295
7UNR|1|a|C|1296
7UNR|1|a|C|1297
*
7UNR|1|a|G|1328
7UNR|1|a|U|1329
7UNR|1|a|C|1330
7UNR|1|a|G|1331

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain m
30S ribosomal protein S13

Coloring options:


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