J3_7UNR_032

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNR_032 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.125

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7UNR|1|A|G|1411
7UNR|1|A|G|1412
7UNR|1|A|G|1413
7UNR|1|A|A|1414
7UNR|1|A|C|1415
7UNR|1|A|G|1416
*
7UNR|1|A|C|1554
7UNR|1|A|C|1555
*
7UNR|1|A|G|1558
7UNR|1|A|A|1559
7UNR|1|A|A|1560
7UNR|1|A|A|1561
7UNR|1|A|A|1562
7UNR|1|A|G|1563
7UNR|1|A|C|1564

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2