J3_7UNU_003

3D structure

PDB id

7UNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUCUA*UCG*CAAG

Length

14 nucleotides

Bulged bases

7UNU|1|A|U|676, 7UNU|1|A|A|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNU_003 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.1049

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7UNU|1|A|C|673
7UNU|1|A|G|674
7UNU|1|A|A|675
7UNU|1|A|U|676
7UNU|1|A|C|677
7UNU|1|A|U|678
7UNU|1|A|A|679
*
7UNU|1|A|U|763
7UNU|1|A|C|764
7UNU|1|A|G|765
*
7UNU|1|A|C|781
7UNU|1|A|A|782
7UNU|1|A|A|783
7UNU|1|A|G|784

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2