J3_7UNU_018

3D structure

PDB id

7UNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNU_018 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0701

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UNU|1|a|U|937
7UNU|1|a|G|938
7UNU|1|a|G|939
7UNU|1|a|A|940
*
7UNU|1|a|U|1229
7UNU|1|a|A|1230
7UNU|1|a|C|1231
*
7UNU|1|a|G|1331
7UNU|1|a|G|1332
7UNU|1|a|A|1333
7UNU|1|a|A|1334

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain m

30S ribosomal protein S13

Chain v

Transfer RNA; tRNA