J3_7UNU_028

3D structure

PDB id

7UNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAC*GGCCAUAGUG*CGUAC

Length

20 nucleotides

Bulged bases

7UNU|1|A|U|315, 7UNU|1|A|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNU_028 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.5058

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7UNU|1|A|G|291
7UNU|1|A|G|292
7UNU|1|A|A|293
7UNU|1|A|A|294
7UNU|1|A|C|295
*
7UNU|1|A|G|310
7UNU|1|A|G|311
7UNU|1|A|C|312
7UNU|1|A|C|313
7UNU|1|A|A|314
7UNU|1|A|U|315
7UNU|1|A|A|316
7UNU|1|A|G|317
7UNU|1|A|U|318
7UNU|1|A|G|319
*
7UNU|1|A|C|331
7UNU|1|A|G|332
7UNU|1|A|U|333
7UNU|1|A|A|334
7UNU|1|A|C|335

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24