J3_7UNV_003

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUCUA*UCG*CAAG

Length

14 nucleotides

Bulged bases

7UNV|1|A|U|676, 7UNV|1|A|A|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNV_003 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.0912

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7UNV|1|A|C|673
7UNV|1|A|G|674
7UNV|1|A|A|675
7UNV|1|A|U|676
7UNV|1|A|C|677
7UNV|1|A|U|678
7UNV|1|A|A|679
*
7UNV|1|A|U|763
7UNV|1|A|C|764
7UNV|1|A|G|765
*
7UNV|1|A|C|781
7UNV|1|A|A|782
7UNV|1|A|A|783
7UNV|1|A|G|784

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2