J3_7UNV_005

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNV_005 not in the Motif Atlas

Homologous match to J3_8VTW_003

Geometric discrepancy: 0.2698

The information below is about J3_8VTW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UNV|1|A|G|1045
7UNV|1|A|G|1046
7UNV|1|A|A|1047
*
7UNV|1|A|U|1071
7UNV|1|A|U|1072
7UNV|1|A|U|1073
7UNV|1|A|A|1074
7UNV|1|A|A|1075
7UNV|1|A|A|1076
7UNV|1|A|G|1077
*
7UNV|1|A|C|1092
7UNV|1|A|A|1093
7UNV|1|A|C|1094

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11