J3_7UNV_007

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7UNV|1|A|A|1599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNV_007 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.132

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7UNV|1|A|C|1293
7UNV|1|A|A|1294
7UNV|1|A|A|1295
7UNV|1|A|G|1296
*
7UNV|1|A|C|1595
7UNV|1|A|C|1596
7UNV|1|A|C|1597
7UNV|1|A|A|1598
7UNV|1|A|A|1599
7UNV|1|A|A|1600
7UNV|1|A|C|1601
*
7UNV|1|A|G|1610
7UNV|1|A|U|1611
7UNV|1|A|G|1612

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34