J3_7UNV_008

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNV_008 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.1312

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7UNV|1|A|C|2078
7UNV|1|A|U|2079
7UNV|1|A|G|2080
*
7UNV|1|A|C|2183
7UNV|1|A|U|2184
7UNV|1|A|A|2185
7UNV|1|A|A|2186
7UNV|1|A|C|2187
*
7UNV|1|A|G|2210
7UNV|1|A|G|2211
7UNV|1|A|A|2212
7UNV|1|A|C|2213
7UNV|1|A|A|2214
7UNV|1|A|G|2215

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28