J3_7UNV_023

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UGUUG*CGUAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNV_023 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1295

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7UNV|1|a|U|1067
7UNV|1|a|G|1068
*
7UNV|1|a|U|1077
7UNV|1|a|G|1078
7UNV|1|a|U|1079
7UNV|1|a|U|1080
7UNV|1|a|G|1081
*
7UNV|1|a|C|1092
7UNV|1|a|G|1093
7UNV|1|a|U|1094
7UNV|1|a|A|1095
7UNV|1|a|A|1096

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain e

30S ribosomal protein S5