3D structure

PDB id
7UNV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
7UNV|1|A|U|439, 7UNV|1|A|C|447
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UNV_027 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.1077
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

7UNV|1|A|C|32
7UNV|1|A|U|33
7UNV|1|A|U|34
7UNV|1|A|G|35
*
7UNV|1|A|C|436
7UNV|1|A|G|437
7UNV|1|A|A|438
7UNV|1|A|U|439
7UNV|1|A|A|440
7UNV|1|A|G|441
7UNV|1|A|U|442
7UNV|1|A|G|443
7UNV|1|A|A|444
7UNV|1|A|A|445
7UNV|1|A|C|446
7UNV|1|A|C|447
7UNV|1|A|A|448
7UNV|1|A|G|449
7UNV|1|A|U|450
7UNV|1|A|A|451
7UNV|1|A|C|452
*
7UNV|1|A|G|459
7UNV|1|A|G|460
7UNV|1|A|A|461
7UNV|1|A|A|462
7UNV|1|A|A|463
7UNV|1|A|G|464

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 6
50S ribosomal protein L34
Chain E
50S ribosomal protein L4
Chain S
50S ribosomal protein L20
Chain V
50S ribosomal protein L23

Coloring options:


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