J3_7UNV_028

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAC*GGCCAUAGUG*CGUAC

Length

20 nucleotides

Bulged bases

7UNV|1|A|U|315, 7UNV|1|A|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNV_028 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.5064

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7UNV|1|A|G|291
7UNV|1|A|G|292
7UNV|1|A|A|293
7UNV|1|A|A|294
7UNV|1|A|C|295
*
7UNV|1|A|G|310
7UNV|1|A|G|311
7UNV|1|A|C|312
7UNV|1|A|C|313
7UNV|1|A|A|314
7UNV|1|A|U|315
7UNV|1|A|A|316
7UNV|1|A|G|317
7UNV|1|A|U|318
7UNV|1|A|G|319
*
7UNV|1|A|C|331
7UNV|1|A|G|332
7UNV|1|A|U|333
7UNV|1|A|A|334
7UNV|1|A|C|335

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24