3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CUAG*CGCAG*CGAUAAG
Length
16 nucleotides
Bulged bases
7UNW|1|a|U|865, 7UNW|1|a|A|867
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UNW_017 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.1554
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

7UNW|1|a|C|820
7UNW|1|a|U|821
7UNW|1|a|A|822
7UNW|1|a|G|823
*
7UNW|1|a|C|851
7UNW|1|a|G|852
7UNW|1|a|C|853
7UNW|1|a|A|854
7UNW|1|a|G|855
*
7UNW|1|a|C|862
7UNW|1|a|G|863
7UNW|1|a|A|864
7UNW|1|a|U|865
7UNW|1|a|A|866
7UNW|1|a|A|867
7UNW|1|a|G|868

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain e
30S ribosomal protein S5
Chain h
30S ribosomal protein S8
Chain u
30S ribosomal protein S21

Coloring options:


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